Serialized Form
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Package weka.classifiers.immune.affinity |
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Package weka.classifiers.immune.airs |
seed
long seed
affinityThresholdScalar
double affinityThresholdScalar
clonalRate
double clonalRate
hypermutationRate
double hypermutationRate
mutationRate
double mutationRate
totalResources
double totalResources
stimulationValue
double stimulationValue
numInstancesAffinityThreshold
int numInstancesAffinityThreshold
arbInitialPoolSize
int arbInitialPoolSize
memInitialPoolSize
int memInitialPoolSize
knn
int knn
trainingSummary
java.lang.String trainingSummary
classifierSummary
java.lang.String classifierSummary
classifier
AISModelClassifier classifier
- The model
seed
long seed
affinityThresholdScalar
double affinityThresholdScalar
clonalRate
double clonalRate
hypermutationRate
double hypermutationRate
totalResources
double totalResources
stimulationValue
double stimulationValue
numInstancesAffinityThreshold
int numInstancesAffinityThreshold
memInitialPoolSize
int memInitialPoolSize
knn
int knn
trainingSummary
java.lang.String trainingSummary
classifierSummary
java.lang.String classifierSummary
classifier
AISModelClassifier classifier
- The model
seed
long seed
affinityThresholdScalar
double affinityThresholdScalar
clonalRate
double clonalRate
hypermutationRate
double hypermutationRate
totalResources
double totalResources
stimulationValue
double stimulationValue
numInstancesAffinityThreshold
int numInstancesAffinityThreshold
memInitialPoolSize
int memInitialPoolSize
knn
int knn
numThreads
int numThreads
mergeMode
int mergeMode
trainingSummary
java.lang.String trainingSummary
classifierSummary
java.lang.String classifierSummary
classifier
AISModelClassifier classifier
- The model
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Package weka.classifiers.immune.airs.algorithm |
kNumNeighbours
int kNumNeighbours
normaliser
weka.filters.unsupervised.attribute.Normalize normaliser
model
CellPool model
affinityFunction
AffinityFunction affinityFunction
attributes
double[] attributes
classIndex
int classIndex
usage
long usage
affinity
double affinity
numResources
double numResources
- number of resources held by the cell
stimulation
double stimulation
- current stimulation value
cells
java.util.LinkedList<E> cells
distanceMeasures
AttributeDistance[] distanceMeasures
classIndex
int classIndex
maxDistance
double maxDistance
minmax
double[][] minmax
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Package weka.classifiers.immune.airs.algorithm.classification |
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Package weka.classifiers.immune.clonalg |
attributes
double[] attributes
classIndex
int classIndex
affinity
double affinity
clonalFactor
double clonalFactor
antibodyPoolSize
int antibodyPoolSize
selectionPoolSize
int selectionPoolSize
totalReplacement
int totalReplacement
numGenerations
int numGenerations
seed
long seed
remainderPoolRatio
double remainderPoolRatio
algorithm
CLONALGAlgorithm algorithm
clonalFactor
double clonalFactor
antibodyPoolSize
int antibodyPoolSize
selectionPoolSize
int selectionPoolSize
replacementPoolSize
int replacementPoolSize
numGenerations
int numGenerations
seed
long seed
remainderPoolRatio
double remainderPoolRatio
memoryPool
Antibody[] memoryPool
remainderPool
Antibody[] remainderPool
rand
java.util.Random rand
affinityFunction
DistanceFunction affinityFunction
initialPopulationSize
int initialPopulationSize
totalGenerations
int totalGenerations
seed
long seed
clonalScaleFactor
double clonalScaleFactor
minimumFitnessThreshold
double minimumFitnessThreshold
kNN
int kNN
numPartitions
int numPartitions
algorithm
CSCAAlgorithm algorithm
trainingSummary
java.lang.String trainingSummary
initialPopulationSize
int initialPopulationSize
totalGenerations
int totalGenerations
seed
long seed
alpha
double alpha
eta
double eta
kNN
int kNN
numPartitions
int numPartitions
debug
boolean debug
memoryPool
java.util.LinkedList<E> memoryPool
rand
java.util.Random rand
affinityFunction
DistanceFunction affinityFunction
partitions
weka.core.Instances[] partitions
partitionIndex
int partitionIndex
antibodiesPrunedPerGeneration
double[] antibodiesPrunedPerGeneration
populationSizePerGeneration
double[] populationSizePerGeneration
antibodiesWithoutErrorPerGeneration
double[] antibodiesWithoutErrorPerGeneration
antibodyFitnessPerGeneration
double[] antibodyFitnessPerGeneration
meanAntibodySwitchesPerGeneration
double[] meanAntibodySwitchesPerGeneration
selectionSetSizePerGeneration
double[] selectionSetSizePerGeneration
trainingClassificationAccuracyPerGeneration
double[] trainingClassificationAccuracyPerGeneration
randomInsertionsPerGeneration
double[] randomInsertionsPerGeneration
clonesPerGeneration
double[] clonesPerGeneration
generationsCompleted
int generationsCompleted
numClasses
int numClasses
classCounts
long[] classCounts
fitness
double fitness
distanceMeasures
AttributeDistance[] distanceMeasures
classIndex
int classIndex
maxDistance
double maxDistance
minmax
double[][] minmax
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Package weka.classifiers.immune.immunos |
attributes
double[] attributes
classIndex
int classIndex
affinity
double affinity
distanceMeasures
AttributeDistance[] distanceMeasures
classIndex
int classIndex
maxDistance
double maxDistance
minmax
double[][] minmax
algorithm
Immunos1Algorithm algorithm
normaliser
weka.filters.unsupervised.instance.Normalize normaliser
affinityFunction
DistanceFunction affinityFunction
groups
weka.core.Instances[] groups
algorithm
Immunos2Algorithm algorithm
normaliser
weka.filters.unsupervised.instance.Normalize normaliser
exemplars
double[][] exemplars
totalGenerations
int totalGenerations
seed
long seed
minimumFitnessThreshold
double minimumFitnessThreshold
seedPopulationPercentage
double seedPopulationPercentage
algorithm
Immunos99Algorithm algorithm
trainingSummary
java.lang.String trainingSummary
normaliser
weka.filters.unsupervised.instance.Normalize normaliser
totalTrainingInstances
int totalTrainingInstances
fitnessComparator
java.util.Comparator<T> fitnessComparator
totalGenerations
int totalGenerations
seed
long seed
eta
double eta
debug
boolean debug
seedPopulationPercentage
double seedPopulationPercentage
memoryPool
java.util.LinkedList<E> memoryPool
antibodyGroups
java.util.LinkedList<E>[] antibodyGroups
stock
java.util.LinkedList<E>[] stock
rand
java.util.Random rand
affinityFunction
DistanceFunction affinityFunction
antibodiesPrunedPerGeneration
double[][] antibodiesPrunedPerGeneration
populationSizePerGeneration
double[][] populationSizePerGeneration
antibodyFitnessPerGeneration
double[][] antibodyFitnessPerGeneration
clonesPerGeneration
double[][] clonesPerGeneration
totalFinalPrune
double[] totalFinalPrune
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Class weka.classifiers.immune.immunos.Immunos99Algorithm.AntibodyFitnessComparator extends java.lang.Object implements Serializable |
numClasses
int numClasses
classCounts
double[] classCounts
fitness
double fitness
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Package weka.classifiers.neural.common |
transferFunction
TransferFunction transferFunction
- Transfer function
rand
RandomWrapper rand
- Random number generator
seed
long seed
rand
java.util.Random rand
biasInputValue
double biasInputValue
inputWeights
double[] inputWeights
dEwE
double[] dEwE
lastWeightDeltas
double[] lastWeightDeltas
biasIndex
int biasIndex
model
NeuralModel model
rand
RandomWrapper rand
randomNumberSeed
long randomNumberSeed
learningRate
double learningRate
learningRateFunction
int learningRateFunction
biasInput
double biasInput
transferFunction
int transferFunction
trainingMode
int trainingMode
trainingIterations
int trainingIterations
numInstances
int numInstances
numClasses
int numClasses
numAttributes
int numAttributes
classIsNominal
boolean classIsNominal
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Package weka.classifiers.neural.common.learning |
initialLearningRate
double initialLearningRate
totalIterations
int totalIterations
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Package weka.classifiers.neural.common.training |
rand
RandomWrapper rand
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Package weka.classifiers.neural.common.transfer |
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Package weka.classifiers.neural.lvq |
epochEventListeners
java.util.LinkedList<E> epochEventListeners
initialisationMode
int initialisationMode
useVoting
boolean useVoting
seed
long seed
numClasses
int numClasses
numAttributes
int numAttributes
initialisationTime
long initialisationTime
trainingTime
long trainingTime
trainingBmuUsage
int[][] trainingBmuUsage
totalTrainingBmuHits
int totalTrainingBmuHits
random
RandomWrapper random
model
CommonModel model
modelHasBeenPreInitialised
boolean modelHasBeenPreInitialised
prepareBmuStatistis
boolean prepareBmuStatistis
trainingQuantisationError
double trainingQuantisationError
trainingAvgQuantisationError
double trainingAvgQuantisationError
numClasses
int numClasses
- Total number of classes in dataset
numAttributes
int numAttributes
- Total number of attributes in dataset
baseAlgorithm
AlgorithmAncestor baseAlgorithm
- Base LVQ model used for clustering
subModelType
weka.classifiers.Classifier subModelType
- Type and configuration of classifier to use for sub models
hitPercentage
double hitPercentage
- Percentage of data running through a bmu for it to be considered a cluster
errorPercentage
double errorPercentage
- Percentage of error a bmu must exibit to be considered a cluster
subModels
weka.classifiers.Classifier[] subModels
- Collection of sub models used instead of BMU's, indexed on bmu id
subModelTrainingData
weka.core.Instances[] subModelTrainingData
- Training data used for training sub models, indexed on bmu id
subModelUsed
boolean[] subModelUsed
- Whether or not a sub model is used for each bmu id
trainingBmuUsage
int[][] trainingBmuUsage
- Matrix of bmu usage calculated after base model construction, using training data
totalTrainingBmuHits
long totalTrainingBmuHits
- Total number of bmu hits (sum of training bmu matrix)
subModelAccuracy
double[] subModelAccuracy
- Accuracy of sub models on training data
windowSize
double windowSize
- Window size value
windowSize
double windowSize
- Window size value
epsilon
double epsilon
- Epsilon value
totalCodebookVectors
int totalCodebookVectors
trainingIterations
int trainingIterations
learningFunction
int learningFunction
learningRate
double learningRate
algorithms
LvqAlgorithmAncestor[] algorithms
trainingTimes
long[] trainingTimes
modelIsInitialised
boolean modelIsInitialised
algorithms
Som[] algorithms
trainingTimes
long[] trainingTimes
modelIsInitialised
boolean modelIsInitialised
mapWidth
int mapWidth
mapHeight
int mapHeight
mapTopology
int mapTopology
neighbourhoodFunction
int neighbourhoodFunction
learningFunction
int learningFunction
neighbourhoodSize
int neighbourhoodSize
learningRate
double learningRate
trainingIterations
int trainingIterations
supervised
boolean supervised
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Package weka.classifiers.neural.lvq.algorithm |
learningKernel
LearningRateKernel learningKernel
model
CommonModel model
rand
RandomWrapper rand
supervised
boolean supervised
epochEventListeners
java.util.LinkedList<E> epochEventListeners
windowSize
double windowSize
epsilonRate
double epsilonRate
neighbourhoodKernel
NeighbourhoodKernel neighbourhoodKernel
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Package weka.classifiers.neural.lvq.model |
codebookId
int codebookId
attributes
double[] attributes
- Vecotrs attribute values
classAttributeIndex
int classAttributeIndex
- Index of the class attribute
distance
double distance
- Distance from a specific data instance at a moment in time
learningRate
double learningRate
- Used in cases where codebook vectors can have their own individual learning rate
bmuCorrectCount
int bmuCorrectCount
- The number of times that the codebook vector is the bmu
bmuIncorrectCount
int bmuIncorrectCount
voting
boolean voting
classHitDistribution
int[] classHitDistribution
codebookCollection
CodebookVector[] codebookCollection
classLabels
java.lang.String[] classLabels
distanceMeasures
AttributeDistance[] distanceMeasures
neighbourhoodDistance
NeighbourhoodDistance neighbourhoodDistance
mapWidth
int mapWidth
mapHeight
int mapHeight
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Package weka.classifiers.neural.lvq.neighborhood |
initialNeighbourhoodSize
double initialNeighbourhoodSize
totalIterations
int totalIterations
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Package weka.classifiers.neural.lvq.topology |
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Package weka.classifiers.neural.lvq.vectordistance |
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Package weka.classifiers.neural.multilayerperceptron |
momentum
double momentum
weightDecay
double weightDecay
hiddenLayer1
int hiddenLayer1
hiddenLayer2
int hiddenLayer2
hiddenLayer3
int hiddenLayer3
momentum
double momentum
weightDecay
double weightDecay
hiddenLayer1
int hiddenLayer1
hiddenLayer2
int hiddenLayer2
hiddenLayer3
int hiddenLayer3
errorIncreaseAdjustment
double errorIncreaseAdjustment
errorDecreaseAdjustment
double errorDecreaseAdjustment
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Package weka.classifiers.neural.multilayerperceptron.algorithm |
neurons
SimpleNeuron[][] neurons
numInputs
int numInputs
activations
double[][] activations
outputs
double[][] outputs
deltas
double[][] deltas
momentum
double momentum
weightDecay
double weightDecay
learningRateFunction
LearningRateKernel learningRateFunction
previousErrorValue
double previousErrorValue
previousErrorWasIncrease
boolean previousErrorWasIncrease
errorDecreaseAdjustment
double errorDecreaseAdjustment
errorIncreaseAdjustment
double errorIncreaseAdjustment
internalLearningRate
double internalLearningRate
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Package weka.classifiers.neural.singlelayerperceptron |
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Package weka.classifiers.neural.singlelayerperceptron.algorithm |
neurons
SimpleNeuron[] neurons
learningRateFunction
LearningRateKernel learningRateFunction
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Package weka.filters.unsupervised.attribute |
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Class weka.filters.unsupervised.attribute.AbstractTimeSeries extends weka.filters.Filter implements Serializable |
m_SelectedCols
weka.core.Range m_SelectedCols
m_FillWithMissing
boolean m_FillWithMissing
m_InstanceRange
int m_InstanceRange
m_History
weka.core.Queue m_History
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Class weka.filters.unsupervised.attribute.Add extends weka.filters.Filter implements Serializable |
m_AttributeType
int m_AttributeType
m_Name
java.lang.String m_Name
m_Insert
weka.core.SingleIndex m_Insert
m_Labels
weka.core.FastVector m_Labels
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Class weka.filters.unsupervised.attribute.AddCluster extends weka.filters.Filter implements Serializable |
m_Clusterer
weka.clusterers.Clusterer m_Clusterer
m_IgnoreAttributesRange
weka.core.Range m_IgnoreAttributesRange
m_removeAttributes
weka.filters.Filter m_removeAttributes
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Class weka.filters.unsupervised.attribute.AddExpression extends weka.filters.Filter implements Serializable |
m_infixExpression
java.lang.String m_infixExpression
m_operatorStack
java.util.Stack<E> m_operatorStack
m_postFixExpVector
java.util.Vector<E> m_postFixExpVector
m_signMod
boolean m_signMod
m_previousTok
java.lang.String m_previousTok
m_attributeName
java.lang.String m_attributeName
m_Debug
boolean m_Debug
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Class weka.filters.unsupervised.attribute.AddNoise extends weka.filters.Filter implements Serializable |
m_AttIndex
weka.core.SingleIndex m_AttIndex
m_UseMissing
boolean m_UseMissing
m_Percent
int m_Percent
m_RandomSeed
int m_RandomSeed
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Class weka.filters.unsupervised.attribute.ChangeDateFormat extends weka.filters.Filter implements Serializable |
m_AttIndex
weka.core.SingleIndex m_AttIndex
m_DateFormat
java.text.SimpleDateFormat m_DateFormat
m_OutputAttribute
weka.core.Attribute m_OutputAttribute
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Class weka.filters.unsupervised.attribute.ClusterMembership extends weka.filters.Filter implements Serializable |
m_clusterer
weka.clusterers.DensityBasedClusterer m_clusterer
m_clusterers
weka.clusterers.DensityBasedClusterer[] m_clusterers
m_ignoreAttributesRange
weka.core.Range m_ignoreAttributesRange
m_removeAttributes
weka.filters.Filter m_removeAttributes
m_priors
double[] m_priors
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Class weka.filters.unsupervised.attribute.Copy extends weka.filters.Filter implements Serializable |
m_CopyCols
weka.core.Range m_CopyCols
m_SelectedAttributes
int[] m_SelectedAttributes
m_InputStringIndex
int[] m_InputStringIndex
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Class weka.filters.unsupervised.attribute.Discretize extends weka.filters.unsupervised.attribute.PotentialClassIgnorer implements Serializable |
m_DiscretizeCols
weka.core.Range m_DiscretizeCols
m_NumBins
int m_NumBins
m_DesiredWeightOfInstancesPerInterval
double m_DesiredWeightOfInstancesPerInterval
m_CutPoints
double[][] m_CutPoints
m_MakeBinary
boolean m_MakeBinary
m_FindNumBins
boolean m_FindNumBins
m_UseEqualFrequency
boolean m_UseEqualFrequency
m_DefaultCols
java.lang.String m_DefaultCols
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Class weka.filters.unsupervised.attribute.FirstOrder extends weka.filters.Filter implements Serializable |
m_DeltaCols
weka.core.Range m_DeltaCols
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Class weka.filters.unsupervised.attribute.MakeIndicator extends weka.filters.Filter implements Serializable |
m_AttIndex
weka.core.SingleIndex m_AttIndex
m_ValIndex
weka.core.Range m_ValIndex
m_Numeric
boolean m_Numeric
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Class weka.filters.unsupervised.attribute.MergeTwoValues extends weka.filters.Filter implements Serializable |
m_AttIndex
weka.core.SingleIndex m_AttIndex
m_FirstIndex
weka.core.SingleIndex m_FirstIndex
m_SecondIndex
weka.core.SingleIndex m_SecondIndex
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Class weka.filters.unsupervised.attribute.NominalToBinary extends weka.filters.Filter implements Serializable |
m_Columns
weka.core.Range m_Columns
m_Indices
int[][] m_Indices
m_Numeric
boolean m_Numeric
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Class weka.filters.unsupervised.attribute.Normalize extends weka.filters.unsupervised.attribute.PotentialClassIgnorer implements Serializable |
m_MinArray
double[] m_MinArray
m_MaxArray
double[] m_MaxArray
m_MinArray
double[] m_MinArray
- The minimum values for numeric attributes.
m_MaxArray
double[] m_MaxArray
- The maximum values for numeric attributes.
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Class weka.filters.unsupervised.attribute.NumericToBinary extends weka.filters.unsupervised.attribute.PotentialClassIgnorer implements Serializable |
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Class weka.filters.unsupervised.attribute.NumericTransform extends weka.filters.Filter implements Serializable |
m_Cols
weka.core.Range m_Cols
m_Class
java.lang.String m_Class
m_Method
java.lang.String m_Method
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Class weka.filters.unsupervised.attribute.Obfuscate extends weka.filters.Filter implements Serializable |
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Class weka.filters.unsupervised.attribute.PKIDiscretize extends weka.filters.unsupervised.attribute.Discretize implements Serializable |
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Class weka.filters.unsupervised.attribute.PotentialClassIgnorer extends weka.filters.Filter implements Serializable |
m_IgnoreClass
boolean m_IgnoreClass
m_ClassIndex
int m_ClassIndex
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Class weka.filters.unsupervised.attribute.RandomProjection extends weka.filters.Filter implements Serializable |
m_k
int m_k
m_percent
double m_percent
m_useGaussian
boolean m_useGaussian
m_distribution
int m_distribution
m_replaceMissing
boolean m_replaceMissing
m_OutputFormatDefined
boolean m_OutputFormatDefined
ntob
weka.filters.Filter ntob
replaceMissing
weka.filters.Filter replaceMissing
m_rndmSeed
long m_rndmSeed
rmatrix
double[][] rmatrix
r
java.util.Random r
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Class weka.filters.unsupervised.attribute.Remove extends weka.filters.Filter implements Serializable |
m_SelectCols
weka.core.Range m_SelectCols
m_SelectedAttributes
int[] m_SelectedAttributes
m_InputStringIndex
int[] m_InputStringIndex
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Class weka.filters.unsupervised.attribute.RemoveType extends weka.filters.Filter implements Serializable |
m_attributeFilter
weka.filters.unsupervised.attribute.Remove m_attributeFilter
m_attTypeToDelete
int m_attTypeToDelete
m_invert
boolean m_invert
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Class weka.filters.unsupervised.attribute.RemoveUseless extends weka.filters.Filter implements Serializable |
m_removeFilter
weka.filters.unsupervised.attribute.Remove m_removeFilter
m_maxVariancePercentage
double m_maxVariancePercentage
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Class weka.filters.unsupervised.attribute.ReplaceMissingValues extends weka.filters.unsupervised.attribute.PotentialClassIgnorer implements Serializable |
m_ModesAndMeans
double[] m_ModesAndMeans
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Class weka.filters.unsupervised.attribute.Standardize extends weka.filters.unsupervised.attribute.PotentialClassIgnorer implements Serializable |
m_Means
double[] m_Means
m_StdDevs
double[] m_StdDevs
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Class weka.filters.unsupervised.attribute.StringToNominal extends weka.filters.Filter implements Serializable |
m_AttIndex
weka.core.SingleIndex m_AttIndex
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Class weka.filters.unsupervised.attribute.StringToWordVector extends weka.filters.Filter implements Serializable |
delimiters
java.lang.String delimiters
m_SelectedRange
weka.core.Range m_SelectedRange
m_Dictionary
java.util.TreeMap<K,V> m_Dictionary
m_OutputCounts
boolean m_OutputCounts
m_Prefix
java.lang.String m_Prefix
docsCounts
int[] docsCounts
numInstances
int numInstances
avgDocLength
double avgDocLength
m_WordsToKeep
int m_WordsToKeep
m_TFTransform
boolean m_TFTransform
m_normalizeDocLength
boolean m_normalizeDocLength
m_IDFTransform
boolean m_IDFTransform
m_onlyAlphabeticTokens
boolean m_onlyAlphabeticTokens
m_lowerCaseTokens
boolean m_lowerCaseTokens
m_useStoplist
boolean m_useStoplist
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Class weka.filters.unsupervised.attribute.SwapValues extends weka.filters.Filter implements Serializable |
m_AttIndex
weka.core.SingleIndex m_AttIndex
m_FirstIndex
weka.core.SingleIndex m_FirstIndex
m_SecondIndex
weka.core.SingleIndex m_SecondIndex
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Class weka.filters.unsupervised.attribute.TimeSeriesDelta extends weka.filters.unsupervised.attribute.TimeSeriesTranslate implements Serializable |
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Class weka.filters.unsupervised.attribute.TimeSeriesTranslate extends weka.filters.unsupervised.attribute.AbstractTimeSeries implements Serializable |